Basic Information
Locus ID:
evm.TU.LG08.883
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 33684553 | 33691414 | - | evm.TU.LG08.883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 43,152.46 Da | 42.21 | 87.22 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 328 | 388 | 5.4E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 327 | 392 | 1.28E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 393 | 4.4E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 387 | 3.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 388 | 11.692616 | IPR001841 |
| Coils | Coil | Coil | 158 | 178 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021773436.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.883, evm.TU.LG22.1042 |