Basic Information
Locus ID:
evm.TU.LG08.882
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 33680266 | 33681438 | - | evm.TU.LG08.882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 42,568.95 Da | 31.52 | 69.03 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 223 | 248 | 1.5E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 251 | 300 | 2.2E-16 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 197 | 268 | 3.8E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 270 | 371 | 1.4E-18 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 223 | 250 | 3.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 289 | 323 | 3.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 254 | 288 | 1.4E-9 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 252 | 286 | 12.495939 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 287 | 321 | 10.55579 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | 8.659485 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 217 | 251 | 9.393891 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 144 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38150.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_010690594.1 | pentatricopeptide repeat-containing protein At4g38150 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZL5 | Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX=3702 GN=At4g38150 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YYS6 | Pentatricopeptide repeat-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4634 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21781 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009897 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11177, Sbi_jg46154 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20493 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005459 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55718, Sgl60932 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000015747, gene:ENSEOMG00000037551 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004800, CQ.Regalona.r1.9AG0019810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30272880 |
| Apiaceae | Apium graveolens | 1 | Ag5G01246 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G004190, COCNU_11G001230 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103711876, gene-LOC103713879, gene-LOC120107506 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1597.V1.1, AsparagusV1_05.1578.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G15492 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005467m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37600.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g063710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1915 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2086 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06900 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.473 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012559, Pov_00035570 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21673 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.1978, CH02.2203, CH04.2307, CH06.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0020310, gene-QOZ80_1BG0070210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0266740.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053210 |
| Poaceae | Oryza coarctata | 2 | Oco01G012240, Oco02G012380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g36600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G166500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602966 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G007850, Chr02G018110, Chr03G008680, Chr05G015850 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G354000, Tel5E01G083000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029500, gene_TRIDC3BG032800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G201400.1.cds1, TraesCS3B02G225500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb342190_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10205, nbis-gene-53087 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8025 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.882, evm.TU.LG22.1044 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g11980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1658 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19879 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4864 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13583 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.29 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22076 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12351 |
| Salicaceae | Populus euphratica | 3 | populus_peu08387, populus_peu36957, populus_peu37432 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604250 |
| Solanaceae | Solanum chilense | 1 | SOLCI004441600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005402 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7897 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0297, TC12G0891 |
| Zosteraceae | Zostera marina | 1 | Zosma05g18840.v3.1 |