Basic Information
Locus ID:
evm.TU.LG08.789
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 9241534 | 9248630 | + | evm.TU.LG08.789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 97,771.76 Da | 43.49 | 75.17 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 141 | 260 | 1.16651E-58 | - |
| CDD | cd18635 | CD_CMT3_like | 404 | 459 | 4.78253E-28 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 405 | 460 | 8.4E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 468 | 828 | 9.1E-34 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 293 | 828 | 7.32E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 391 | 462 | 3.59E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 277 | 383 | 5.8E-15 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 404 | 845 | 3.2E-231 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 622 | 794 | 3.2E-231 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 77 | 245 | 1.3E-48 | IPR043151 |
| SMART | SM00439 | BAH_4 | 141 | 260 | 7.4E-9 | IPR001025 |
| SMART | SM00298 | chromo_7 | 404 | 462 | 3.5E-8 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 472 | 825 | 1.2E-29 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 293 | 835 | 44.777782 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 141 | 260 | 16.301304 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 405 | 457 | 12.050701 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 427 | 447 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 563 | 576 | 9.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 294 | 310 | 9.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 517 | 531 | 9.7E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_031259787.1 | LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase CMT3 [Pistacia vera] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | T1WH19 | CMT-type DNA-methyltransferase OS=Citrus sinensis OX=2711 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology