Basic Information
Locus ID:
evm.TU.LG08.757
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 8658979 | 8668856 | - | evm.TU.LG08.757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 136,771.17 Da | 44.77 | 75.70 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 650 | 782 | 9.24739E-73 | - |
| CDD | cd17920 | DEXHc_RecQ | 447 | 649 | 7.73411E-103 | - |
| Pfam | PF09382 | RQC domain | 873 | 989 | 2.3E-24 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 784 | 865 | 7.9E-15 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 1031 | 1099 | 5.0E-15 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 666 | 772 | 9.3E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 461 | 629 | 8.6E-20 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 648 | 916 | 1.64E-59 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1030 | 1104 | 1.83E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 425 | 792 | 1.01E-43 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 873 | 983 | 9.8E-22 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 650 | 869 | 1.8E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1024 | 1111 | 6.4E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 423 | 649 | 1.4E-91 | IPR027417 |
| SMART | SM00490 | helicmild6 | 692 | 773 | 3.3E-28 | IPR001650 |
| SMART | SM00341 | hrdc7 | 1027 | 1109 | 1.9E-6 | IPR002121 |
| SMART | SM00956 | RQC_2 | 875 | 986 | 1.3E-27 | IPR018982 |
| SMART | SM00487 | ultradead3 | 455 | 658 | 2.7E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 451 | 926 | 2.2E-165 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 667 | 817 | 19.710861 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 682 | 724 | 8.785675 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 467 | 642 | 22.731789 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1027 | 1109 | 18.236418 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 581 | 590 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1199 | 1218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1012 | - | - |
| Coils | Coil | Coil | 319 | 346 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_006471018.2 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Citrus sinensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7H9T1 | DNA helicase OS=Acer yangbiense OX=1000413 GN=EZV62_018984 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology