Basic Information
Locus ID:
evm.TU.LG08.742
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 30324865 | 30329900 | + | evm.TU.LG08.742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 65,900.27 Da | 49.23 | 76.34 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 380 | 513 | 3.98279E-67 | - |
| CDD | cd17920 | DEXHc_RecQ | 182 | 379 | 4.35217E-96 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 190 | 359 | 2.9E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 396 | 503 | 2.9E-17 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 516 | 586 | 1.4E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 524 | 5.58E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 380 | 588 | 2.9E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 149 | 379 | 4.3E-83 | IPR027417 |
| SMART | SM00490 | helicmild6 | 422 | 504 | 3.1E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 184 | 388 | 1.4E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 182 | 587 | 2.3E-154 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 394 | 545 | 19.178066 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 196 | 372 | 20.279703 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 142 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021860966.1 | ATP-dependent DNA helicase Q-like 1 [Spinacia oleracea] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology