Basic Information
Locus ID:
evm.TU.LG08.659
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 28643700 | 28651109 | + | evm.TU.LG08.659 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 92,395.57 Da | 56.28 | 52.38 | -1.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 407 | 434 | 5.0E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 373 | 401 | 7.1E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 366 | 402 | 3.26E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 404 | 435 | 3.5E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 365 | 403 | 1.4E-15 | - |
| SMART | SM00547 | zf_4 | 375 | 399 | 2.6E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 408 | 432 | 1.0E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 406 | 435 | 9.314576 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 373 | 402 | 10.138906 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 410 | 429 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 377 | 396 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 657 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology