Basic Information
Locus ID:
evm.TU.LG08.537
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 5375028 | 5376188 | - | evm.TU.LG08.537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 45,604.10 Da | 58.03 | 88.58 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 36 | 71 | 3.6E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 80 | 4.84E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 72 | 2.1E-6 | - |
| SMART | SM00256 | fbox_2 | 36 | 76 | 0.0019 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 30 | 77 | 10.053852 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010647408.1 | PREDICTED: putative F-box protein At3g52320 isoform X1 [Vitis vinifera] | 0 |
| Q9C6J3 | Putative F-box protein At1g50870 OS=Arabidopsis thaliana OX=3702 GN=At1g50870 PE=4 SV=1 | 0 | |
| TrEMBL | A0A438HPM1 | Putative F-box protein OS=Vitis vinifera OX=29760 GN=VvCHDp001054_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 7 | evm.TU.LG08.537, evm.TU.LG11.863, evm.TU.LG12.619 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu26090 |