Basic Information
Locus ID:
evm.TU.LG08.36
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1368771 | 1382713 | + | evm.TU.LG08.36 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 89,479.67 Da | 51.76 | 82.32 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 661 | 720 | 1.54735E-10 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 153 | 372 | 1.2E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 681 | 720 | 3.0E-7 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 660 | 722 | 2.81E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 141 | 397 | 1.59E-19 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 140 | 413 | 1.9E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 656 | 727 | 8.8E-11 | - |
| SMART | SM00577 | forpap2 | 205 | 381 | 1.1E-13 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 659 | 723 | 1.3E-9 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 146 | 394 | 16.357355 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 658 | 724 | 13.47051 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 628 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021854600.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Spinacia oleracea] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RJ10 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_067230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology