Basic Information
Locus ID:
evm.TU.LG08.317
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 2961005 | 2964896 | - | evm.TU.LG08.317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 45,890.49 Da | 37.67 | 77.43 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 163 | 196 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 332 | 2.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 252 | 288 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 245 | 0.016 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 16 | 87 | 1.9E-23 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 388 | 2.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 113 | 391 | 2.02E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 404 | 1.0E-134 | IPR015943 |
| SMART | SM00320 | WD40_4 | 349 | 389 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 196 | 5.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 288 | 8.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 332 | 1.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 205 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 290 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 299 | 334 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 198 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 356 | 390 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 299 | 334 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 254 | 10.34136 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 183 | 197 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 319 | 333 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 183 | 197 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 275 | 289 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 319 | 333 | 3.6E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_044509799.1 | WD-40 repeat-containing protein MSI3-like [Mangifera indica] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067FXA8 | CAF1C_H4-bd domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g015484mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology