Basic Information
Locus ID:
evm.TU.LG08.308
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 2878160 | 2887861 | + | evm.TU.LG08.308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 202,722.69 Da | 49.07 | 85.24 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1473 | 1883 | 1.08664E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1520 | 1888 | 1.9E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 182 | 649 | 6.53E-41 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1465 | 1881 | 4.45E-95 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1760 | 1886 | 3.4E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1412 | 1652 | 1.2E-43 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 171 | 471 | 2.0E-52 | IPR011989 |
| SMART | SM00185 | arm_5 | 340 | 378 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 257 | 298 | 180.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 214 | 255 | 44.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1484 | 1888 | 1.2E-83 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1497 | 1888 | 56.893375 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1063 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1279 | 1307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 1089 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1075 | 1089 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1283 | 1307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1135 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 969 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1157 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_031263853.1 | E3 ubiquitin-protein ligase UPL3-like [Pistacia vera] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7I844 | HECT-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_011756 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology