Basic Information
Locus ID:
evm.TU.LG08.298
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 16311274 | 16314989 | - | evm.TU.LG08.298 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 109,404.44 Da | 45.90 | 60.17 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 626 | 662 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 762 | 796 | 0.0067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 584 | 620 | 5.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 509 | 2.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 473 | 800 | 1.12E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 575 | 826 | 5.8E-46 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 401 | 545 | 2.8E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 471 | 510 | 2.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 755 | 796 | 0.0066 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 662 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 620 | 9.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 664 | 703 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 718 | 754 | 11.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 629 | 664 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 478 | 512 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 776 | 805 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 629 | 664 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 588 | 621 | 11.945589 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 478 | 519 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 588 | 629 | 14.552052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 497 | 511 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 607 | 621 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 607 | 621 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 649 | 663 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 497 | 511 | 2.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 870 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 929 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 955 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 455 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology