Basic Information
Locus ID:
evm.TU.LG08.257
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 2344497 | 2347162 | - | evm.TU.LG08.257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 50,488.38 Da | 52.65 | 77.47 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 137 | 425 | 3.62954E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 425 | 1.8E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 174 | 230 | 2.8E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 340 | 0.0021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 289 | 3.6E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 124 | 426 | 1.22E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 428 | 3.5E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 120 | 161 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 246 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 166 | 205 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 340 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 425 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 289 | 4.0E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 426 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 173 | 214 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 257 | 289 | 11.998316 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 173 | 205 | 8.702878 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 426 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 257 | 289 | 14.518635 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 412 | 426 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_006429995.1 | cell division cycle 20.2, cofactor of APC complex [Citrus clementina] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4SW50 | ANAPC4_WD40 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10011710mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology