Basic Information
Locus ID:
evm.TU.LG08.227
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 2016731 | 2020239 | - | evm.TU.LG08.227 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 35,070.33 Da | 60.86 | 64.97 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 5.5E-80 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 107 | 7.3E-45 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 1.4E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 314 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_031285116.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Pistacia vera] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P4NZC2 | ubiquitin fusion degradation protein 1 homolog OS=Gossypium arboreum OX=29729 GN=LOC108476819 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology