Basic Information
Locus ID:
evm.TU.LG08.193
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 11224940 | 11237552 | - | evm.TU.LG08.193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 43,322.89 Da | 47.08 | 78.76 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 171 | 220 | 2.55855E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 355 | 397 | 2.5705E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 35 | 108 | 9.10007E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 178 | 215 | 4.7E-15 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 358 | 394 | 8.1E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 37 | 110 | 4.4E-16 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 278 | 333 | 6.7E-23 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 160 | 220 | 5.96E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 275 | 341 | 9.29E-23 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 338 | 400 | 1.31E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 35 | 119 | 6.45E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 268 | 334 | 7.3E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 350 | 398 | 2.9E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 29 | 111 | 1.5E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 170 | 220 | 9.4E-21 | - |
| SMART | SM00165 | uba_6 | 177 | 217 | 2.6E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 359 | 396 | 1.7E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 35 | 109 | 2.0E-22 | IPR000626 |
| SMART | SM00727 | CBM | 276 | 319 | 1.6E-5 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 35 | 402 | 2.1E-129 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 175 | 218 | 13.41439 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 35 | 113 | 18.562737 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 357 | 397 | 15.727711 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 304 | 326 | 1.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 369 | 1.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 385 | 400 | 1.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 384 | 1.5E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 157 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C8Z7R0 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology