Basic Information
Locus ID:
evm.TU.LG08.1605
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 42151969 | 42155365 | - | evm.TU.LG08.1605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 45,981.94 Da | 38.02 | 94.61 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 58 | 384 | 6.40024E-167 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 62 | 325 | 5.9E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 62 | 325 | 5.81E-57 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 329 | 382 | 2.49E-7 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 397 | 4.0E-108 | IPR027417 |
| SMART | SM00382 | AAA_5 | 112 | 292 | 4.3E-5 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 59 | 381 | 5.0E-135 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 259 | 330 | 26.00152 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 90 | 249 | 37.466217 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 271 | 279 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 354 | 371 | 1.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 182 | 211 | 1.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 268 | 296 | 1.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 220 | 249 | 1.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 301 | 330 | 1.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 148 | 177 | 1.9E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 59 | 386 | 43.019302 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 427 | - | - |
| Coils | Coil | Coil | 361 | 381 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_010696516.1 | DNA repair protein recA homolog 3, mitochondrial isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8ZFQ8 | DNA repair protein recA homolog 3, mitochondrial OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology