Basic Information
Locus ID:
evm.TU.LG08.1594
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 42057243 | 42058025 | - | evm.TU.LG08.1594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 28,746.91 Da | 70.58 | 79.08 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 151 | 194 | 3.74275E-19 | - |
| Pfam | PF13639 | Ring finger domain | 151 | 194 | 6.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 199 | 3.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 197 | 2.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 152 | 193 | 4.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 152 | 194 | 13.153163 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010666002.2 | RING-H2 finger protein ATL57 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SJJ7 | RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8DZX1 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_9g225350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12946, jg16510, jg35948, jg8202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011684 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11972, Sbi_jg46905 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009535 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80387, Sgl82848 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000020022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0012490 |
| Apiaceae | Apium graveolens | 1 | AgUnG00066 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007970 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511234 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G20202 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G27940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017824m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g10760.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1688 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1683, Cgl05G1686, Cgl05G1687 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g06060 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g01750, gene.Thate08g01760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-480 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015906, Pov_00026478 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1041, evm.TU.LG08.1594, evm.TU.LG11.480 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g13740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.834 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16589 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5506 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17158 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.20 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012333 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23172 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23798 |
| Salicaceae | Populus euphratica | 2 | populus_peu02506, populus_peu37716 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600491 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003390 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1906 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23090.v3.1 |