Basic Information
Locus ID:
evm.TU.LG08.1532
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 41463576 | 41468695 | + | evm.TU.LG08.1532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 71,185.93 Da | 51.28 | 67.09 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 374 | 503 | 4.28896E-64 | - |
| CDD | cd00201 | WW | 19 | 49 | 9.47969E-5 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 386 | 494 | 3.4E-34 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 179 | 349 | 1.2E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 18 | 48 | 2.1E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 508 | 1.96E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 51 | 1.75E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 12 | 57 | 1.5E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 364 | 535 | 2.1E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 133 | 363 | 1.2E-89 | IPR027417 |
| SMART | SM00490 | helicmild6 | 414 | 494 | 2.9E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 17 | 50 | 4.9E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 174 | 377 | 1.8E-65 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 186 | 360 | 30.653913 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 155 | 183 | 10.704907 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 389 | 533 | 26.164162 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 16 | 50 | 11.152 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 306 | 314 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 22 | 48 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 613 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021737705.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AIL9 | RNA helicase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology