Basic Information
Locus ID:
evm.TU.LG08.1488
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 41090480 | 41095988 | + | evm.TU.LG08.1488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 92,723.20 Da | 68.02 | 64.31 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 771 | 811 | 3.68468E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 769 | 816 | 1.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 771 | 817 | 4.86E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 753 | 822 | 7.8E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 772 | 811 | 10.689412 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 154 | - | - |
| Coils | Coil | Coil | 94 | 114 | - | - |
| Coils | Coil | Coil | 702 | 722 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A7C9ASD0 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology