halophFGD

Basic Information

Locus ID: evm.TU.LG08.146

Species & Taxonomic ID: Portulaca oleracea & 46147

Genome Assembly: GWHCBIU00000000

Description: AMSH-like ubiquitin thioesterase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	8034754	8059584	-	evm.TU.LG08.146

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.24	56,711.59 Da	53.51	80.88	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd08066	MPN_AMSH_like	323	500	7.86856E-115	IPR044098
Pfam	PF08969	USP8 dimerisation domain	13	104	1.7E-11	IPR015063
Pfam	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	322	429	6.2E-17	IPR000555
SUPERFAMILY	SSF102712	JAB1/MPN domain	325	456	2.62E-19	-
Gene3D	G3DSA:1.20.58.80	-	2	128	4.5E-32	-
Gene3D	G3DSA:3.40.140.10	Cytidine Deaminase, domain 2	312	500	1.7E-71	-
SMART	SM00232	pad1_6	325	453	2.6E-13	IPR000555
ProSiteProfiles	PS50249	MPN domain profile.	326	456	27.365774	IPR037518
MobiDBLite	mobidb-lite	consensus disorder prediction	299	318	-	-
Coils	Coil	Coil	94	114	-	-

Gene Ontology

Biological Process:

GO:0016579 (protein deubiquitination) GO:0070536 (protein K63-linked deubiquitination)

Molecular Function:

GO:0005515 (protein binding) GO:0008233 (peptidase activity) GO:0008237 (metallopeptidase activity) GO:0061578 (K63-linked deubiquitinase activity)

KEGG Pathway

KO Term:

K11866 (STAM-binding protein [EC:3.4.19.12])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48790.1	associated molecule with the SH3 domain of STAM 1.
RefSeq	XP_010670900.1	AMSH-like ubiquitin thioesterase 3 isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q5PNU3	AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2
TrEMBL	A0A7C9ELE0	MPN domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg12370, jg12371, jg27361, jg28086, jg34626
Aizoaceae	Mesembryanthemum crystallinum	3	gene_15922, gene_19921, gene_3637
Amaranthaceae	Atriplex hortensis	4	Ah002165, Ah013563, Ah019134, Ah038854
Amaranthaceae	Beta vulgaris	3	BVRB_3g047990, BVRB_5g111050, BVRB_6g148830
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg32062, Sbi_jg37993, Sbi_jg42928, Sbi_jg45539 ... Sbi_jg57302, Sbi_jg6126
Amaranthaceae	Salicornia europaea	3	Seu_jg11387, Seu_jg15710, Seu_jg25028
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00002414, GOSA_00006186, GOSA_00006187, GOSA_00023067
Amaranthaceae	Suaeda glauca	8	Sgl00874, Sgl05828, Sgl05956, Sgl35353, Sgl40708, Sgl53884 ... Sgl59141, Sgl59223
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000001077, gene:ENSEOMG00000001268 ... gene:ENSEOMG00000003955, gene:ENSEOMG00000006996, gene:ENSEOMG00000013685, gene:ENSEOMG00000022149, gene:ENSEOMG00000022728, gene:ENSEOMG00000026853, gene:ENSEOMG00000029498, gene:ENSEOMG00000044821
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0001150, CQ.Regalona.r1.3BG0001190 ... CQ.Regalona.r1.5BG0016520, CQ.Regalona.r1.6AG0005330, CQ.Regalona.r1.6BG0005560
Anacardiaceae	Pistacia vera	3	pistato.v30146600, pistato.v30222290, pistato.v30233560
Apiaceae	Apium graveolens	3	Ag1G01327, Ag1G01996, Ag7G02372
Arecaceae	Cocos nucifera	3	COCNU_02G006060, COCNU_06G007260, COCNU_12G002850
Arecaceae	Phoenix dactylifera	4	gene-LOC103712639, gene-LOC103712884, gene-LOC103715835 ... gene-LOC103719560
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2975.V1.1, AsparagusV1_01.3634.V1.1 ... AsparagusV1_02.2176.V1.1
Asteraceae	Flaveria trinervia	2	Ftri5G32707, FtriNA12935
Brassicaceae	Arabidopsis thaliana	3	AT1G10600.1, AT1G48790.1, AT4G16144.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008718m.g.v1.0, Thhalv10011406m.g.v1.0 ... Thhalv10025009m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g09280.v2.2, Sp1g35710.v2.2, Sp7g14630.v2.2
Brassicaceae	Brassica nigra	5	BniB02g073480.2N, BniB04g028970.2N, BniB04g061870.2N ... BniB05g020230.2N, BniB07g007020.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2433, Ceq07G0797, Ceq09G1073
Casuarinaceae	Casuarina glauca	3	Cgl03G2571, Cgl07G0852, Cgl09G1163
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g13540, gene.Cymno07g07270, gene.Cymno07g07850
Dunaliellaceae	Dunaliella salina	2	Dusal.0014s00029.v1.0, Dusal.2473s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g23050, gene.Thate06g04700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5460
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1017, evm.TU.LG10.335, evm.TU.LG11.1229
Plantaginaceae	Plantago ovata	2	Pov_00026054, Pov_00033310
Plumbaginaceae	Limonium bicolor	3	Lb1G00689, Lb1G03041, Lb3G16493
Poaceae	Echinochloa crus-galli	8	AH02.1572, AH02.2625, BH02.1635, BH02.1818, BH02.1823 ... BH02.1826, CH02.1794, CH02.1952
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0015920, gene-QOZ80_1AG0027460 ... gene-QOZ80_1BG0064650, gene-QOZ80_1BG0068830, gene-QOZ80_1BG0077650
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0260960.1, HORVU.MOREX.r3.3HG0277400.1 ... HORVU.MOREX.r3.4HG0338900.1
Poaceae	Lolium multiflorum	3	gene-QYE76_052853, gene-QYE76_052876, gene-QYE76_054344
Poaceae	Oryza coarctata	6	Oco01G009640, Oco01G010760, Oco01G016400, Oco02G009990 ... Oco02G011700, Oco02G016580
Poaceae	Oryza sativa	3	LOC_Os01g23640.1, LOC_Os01g31470.1, LOC_Os01g47262.2
Poaceae	Paspalum vaginatum	3	gene-BS78_03G146100, gene-BS78_03G220200 ... gene-BS78_04G024000
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0205378, Pt_Chr0504671, Pt_Chr0504689, Pt_Chr0603578 ... Pt_Chr0605019
Poaceae	Sporobolus alterniflorus	7	Chr02G013670, Chr02G016360, Chr02G022780, Chr04G024240 ... Chr05G013710, Chr05G020100, Chr06G026660
Poaceae	Thinopyrum elongatum	3	Tel3E01G332400, Tel3E01G405500, Tel4E01G097700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG027130, gene_TRIDC3AG035890 ... gene_TRIDC3BG032370, gene_TRIDC3BG040210, gene_TRIDC4AG040230, gene_TRIDC4BG008920
Poaceae	Triticum aestivum	9	TraesCS3A02G192900.2, TraesCS3A02G240000.2 ... TraesCS3B02G223600.1, TraesCS3B02G268400.1, TraesCS3D02G199200.1, TraesCS3D02G240400.1, TraesCS4A02G257200.1, TraesCS4B02G057300.1, TraesCS4D02G057500.1
Poaceae	Zea mays	4	Zm00001eb131320_P001, Zm00001eb340870_P003 ... Zm00001eb341740_P001, Zm00001eb359600_P001
Poaceae	Zoysia japonica	3	nbis-gene-51054, nbis-gene-51998, nbis-gene-6450
Poaceae	Zoysia macrostachya	4	Zma_g10280, Zma_g24920, Zma_g7933, Zma_g8368
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.2289, evm.TU.LG04.2541, evm.TU.LG08.146 ... evm.TU.LG13.213, evm.TU.LG14.1464
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g08950, gene.Posoc01g30910, gene.Posoc04g20710 ... gene.Posoc04g23150
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.747, evm.TU.Scaffold_3_RagTag.634 ... evm.TU.Scaffold_4_RagTag.748, evm.TU.Scaffold_6_RagTag.554
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-1341, nbisL1-mrna-16141, nbisL1-mrna-26921 ... nbisL1-mrna-28605
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-15849, nbisL1-mrna-17016, nbisL1-mrna-18433 ... nbisL1-mrna-7567
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15648, nbisL1-mrna-1623, nbisL1-mrna-449 ... nbisL1-mrna-6327
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.404, evm.TU.utg000008l.483 ... evm.TU.utg000011l.313, evm.TU.utg000019l.833
Rhizophoraceae	Kandelia obovata	4	Maker00000497, Maker00002688, Maker00007069, Maker00012397
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-11259, nbisL1-mrna-14420, nbisL1-mrna-14558 ... nbisL1-mrna-22292, nbisL1-mrna-5299
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13073, nbisL1-mrna-17764, nbisL1-mrna-19243
Salicaceae	Populus euphratica	6	populus_peu02352, populus_peu16493, populus_peu16506 ... populus_peu20865, populus_peu28315, populus_peu28316
Solanaceae	Lycium barbarum	4	gene-LOC132611101, gene-LOC132614025, gene-LOC132626648 ... gene-LOC132633265
Solanaceae	Solanum chilense	2	SOLCI002451500, SOLCI005653000
Solanaceae	Solanum pennellii	3	gene-LOC107008509, gene-LOC107015184, gene-LOC107016564
Tamaricaceae	Reaumuria soongarica	2	STRG.15681_chr08_-, gene_5293
Tamaricaceae	Tamarix chinensis	2	TC05G0026, TC06G1420
Zosteraceae	Zostera marina	4	Zosma01g27770.v3.1, Zosma04g19070.v3.1, Zosma04g19090.v3.1 ... Zosma04g22610.v3.1