Basic Information
Locus ID:
evm.TU.LG08.1245
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 38592137 | 38600551 | - | evm.TU.LG08.1245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 14,423.97 Da | 35.87 | 80.63 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 5 | 45 | 1.7E-8 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 62 | 3.14E-10 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 8 | 92 | 2.3E-7 | IPR036879 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 44 | 10.694247 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 98 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027158737.1 | agamous-like MADS-box protein AGL80 [Coffea eugenioides] | 0 |
| TrEMBL | A0A7C9DE55 | MADS-box domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11852 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005391 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079360 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg43063 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11505 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24060, Sgl29242 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0005160, CQ.Regalona.r1.4AG0010620 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30195120 |
| Apiaceae | Apium graveolens | 1 | Ag5G00079 |
| Arecaceae | Cocos nucifera | 1 | contig69567357G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720289 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.144.V1.1, AsparagusV1_07.2301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G31473 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G05870.1, AT5G26640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g04760.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g078700.2N, BniB04g004510.2N, BniB07g032680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0019 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0020, Cgl06G1153 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno17g01430, gene.Cymno17g01510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0342s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07280 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001783, Pov_00040386 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17986 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.4538 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0031840, gene-QOZ80_1BG0082060 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0383160.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000504, gene-QYE76_068548 |
| Poaceae | Oryza coarctata | 2 | Oco05G011290, Oco06G011530 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g19059.1, LOC_Os07g22840.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G381900, gene-BS78_03G117800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0500111 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032610, Chr04G014200, Chr07G002370, Chr12G006930 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G018900, Tel4E01G334500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG016320, gene_TRIDC4BG032630 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G118100.1.cds1, TraesCS4D02G187600.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3552, nbis-gene-57012 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1245, evm.TU.LG22.152 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g11130 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11005, nbisL1-mrna-21330 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009211, Maker00013934 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10383 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15444, nbisL1-mrna-4735 |
| Salicaceae | Populus euphratica | 1 | populus_peu24079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598521, gene-LOC132615929 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008147 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_519 |
| Zosteraceae | Zostera marina | 2 | Zosma05g21550.v3.1, Zosma05g28110.v3.1 |