Basic Information
Locus ID:
evm.TU.LG08.1226
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 38362266 | 38373676 | - | evm.TU.LG08.1226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 54,245.91 Da | 38.29 | 77.24 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 444 | 488 | 1.19834E-21 | - |
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 36 | 99 | 7.6E-26 | IPR003958 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 443 | 483 | 1.6E-9 | - |
| Pfam | PF07002 | Copine | 187 | 397 | 5.7E-72 | IPR010734 |
| SUPERFAMILY | SSF47113 | Histone-fold | 33 | 119 | 1.29E-34 | IPR009072 |
| SUPERFAMILY | SSF53300 | vWA-like | 162 | 364 | 1.07E-5 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 442 | 484 | 1.06E-7 | - |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 22 | 142 | 1.2E-38 | IPR009072 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 433 | 489 | 3.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 445 | 477 | 0.0047 | IPR001841 |
| SMART | SM00327 | VWA_4 | 161 | 364 | 4.7E-7 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 445 | 478 | 11.264779 | IPR001841 |
| ProSitePatterns | PS00685 | NF-YB/HAP3 subunit signature. | 66 | 82 | - | IPR003956 |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 63 | 81 | 1.5E-15 | - |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 82 | 100 | 1.5E-15 | - |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 101 | 119 | 1.5E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63970.1 | Copine (Calcium-dependent phospholipid-binding protein) family. | 0 |
| RefSeq | XP_021734584.1 | E3 ubiquitin-protein ligase RGLG3-like [Chenopodium quinoa] | 0 |
| Q8RX26 | E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q7A7 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_212680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology