Basic Information
Locus ID:
evm.TU.LG08.1124
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 37080322 | 37082055 | + | evm.TU.LG08.1124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 44,309.56 Da | 42.60 | 73.27 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 376 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 320 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 233 | 0.005 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 11 | 82 | 7.9E-20 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 276 | 0.0062 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 381 | 3.4E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 388 | 6.4E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 337 | 377 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 276 | 7.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 233 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 320 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 184 | 1.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 378 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 193 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 242 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 321 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 187 | 9.836508 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 321 | 11.075592 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 236 | 8.676514 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 307 | 321 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 171 | 185 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 4.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 307 | 321 | 4.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 4.8E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_042004345.1 | WD-40 repeat-containing protein MSI2-like [Salvia splendens] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5BSR0 | CAF1C_H4-bd domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology