Basic Information
Locus ID:
evm.TU.LG08.1065
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 14967658 | 14969211 | + | evm.TU.LG08.1065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 59,760.46 Da | 49.08 | 69.38 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 193 | 263 | 4.7E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 287 | 326 | 2.7E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 282 | 327 | 4.29E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 270 | 8.25E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 204 | 1.7E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 259 | 493 | 7.8E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 207 | 1.3E-12 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 192 | 263 | 1.6E-16 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 267 | 334 | 1.8E-6 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 114 | 338 | 36.691101 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 168 | 9.612443 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 510 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021658433.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X3 [Hevea brasiliensis] | 0 |
| P0C8K8 | Putative E3 ubiquitin-protein ligase ARI6 OS=Arabidopsis thaliana OX=3702 GN=ARI6 PE=5 SV=1 | 0 | |
| TrEMBL | A0A6N2MTG9 | RBR-type E3 ubiquitin transferase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS364921 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for evm.TU.LG08.1065.