Basic Information
Locus ID:
evm.TU.LG08.1063
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 14902696 | 14928677 | - | evm.TU.LG08.1063 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 96,028.72 Da | 37.15 | 81.33 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 116 | 237 | 1.48237E-57 | - |
| CDD | cd18635 | CD_CMT3_like | 393 | 449 | 5.19904E-31 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 458 | 816 | 9.3E-32 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 395 | 449 | 3.4E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 119 | 232 | 1.4E-11 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 265 | 819 | 3.39E-70 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 387 | 454 | 2.02E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 222 | 615 | 1.0E-164 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 616 | 785 | 3.3E-61 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 48 | 221 | 4.8E-53 | IPR043151 |
| SMART | SM00298 | chromo_7 | 393 | 452 | 5.8E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 117 | 236 | 6.1E-19 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 117 | 236 | 18.680704 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 265 | 826 | 41.50687 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 394 | 447 | 12.467001 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 417 | 437 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 266 | 282 | 6.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 553 | 566 | 6.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 507 | 521 | 6.4E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 384 | - | - |
| Coils | Coil | Coil | 352 | 379 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_044461565.1 | putative DNA (cytosine-5)-methyltransferase CMT1 [Mangifera indica] | 0 |
| O49139 | Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis thaliana OX=3702 GN=CMT1 PE=5 SV=2 | 0 | |
| TrEMBL | V4SV75 | Cytosine-specific methyltransferase OS=Citrus clementina OX=85681 GN=CICLE_v10000251mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology