Basic Information
Locus ID:
evm.TU.LG08.1032
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 14217891 | 14225518 | + | evm.TU.LG08.1032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 83,758.49 Da | 48.42 | 79.46 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 549 | 595 | 7.92322E-13 | IPR002999 |
| Pfam | PF00646 | F-box domain | 53 | 90 | 3.6E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 195 | 241 | 1.2E-11 | IPR006652 |
| Pfam | PF06003 | Survival motor neuron protein (SMN) | 528 | 600 | 8.2E-7 | IPR010304 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 545 | 596 | 6.17E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 131 | 1.1E-10 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 104 | 359 | 9.15E-46 | IPR015915 |
| Gene3D | G3DSA:2.30.30.140 | - | 539 | 597 | 3.3E-13 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 55 | 91 | 1.4E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 99 | 373 | 2.1E-36 | IPR015915 |
| SMART | SM00612 | kelc_smart | 158 | 206 | 0.1 | IPR006652 |
| SMART | SM00256 | fbox_2 | 56 | 96 | 2.4E-5 | IPR001810 |
| SMART | SM00333 | TUDOR_7 | 544 | 601 | 2.0E-13 | IPR002999 |
| SMART | SM00612 | kelc_smart | 207 | 254 | 3.9E-7 | IPR006652 |
| ProSiteProfiles | PS50304 | Tudor domain profile. | 545 | 603 | 14.854695 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 548 | - | - |
| Coils | Coil | Coil | 601 | 621 | - | - |
| Coils | Coil | Coil | 455 | 475 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30090.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021595411.1 | F-box/kelch-repeat protein At1g30090 [Manihot esculenta] | 0 |
| Q9C6Z0 | F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g30090 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P5DH59 | F-box domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_064040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20763, jg25017 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_236 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017853 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181440 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg10316 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22096 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005981 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71006, Sgl74598 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011940, gene:ENSEOMG00000032007 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0003850, CQ.Regalona.r1.8BG0003990 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30069580, pistato.v30251820 |
| Apiaceae | Apium graveolens | 2 | Ag11G04916, Ag6G01122 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G008690, COCNU_06G020330, COCNU_11G002450 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103695743, gene-LOC103707095, gene-LOC103715962 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1877.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G13236, Ftri5G03235 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30090.1, AT2G24540.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000205m.g.v1.0, Thhalv10007818m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g25950.v2.2, Sp4g03540.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g022520.2N, BniB04g045430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0271, Ceq04G2181 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0383, Cgl04G2374 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g07780, gene.Cymno06g07000 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g26470, gene.Thate04g11040 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-344, nbisL1-mrna-873 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1595, evm.TU.LG08.1032 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013133 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.253, AH06.2511, BH03.329, BH06.2314, CH06.2539 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6BG0500450, gene-QOZ80_7AG0555820 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0202250.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036491, gene-QYE76_042526 |
| Poaceae | Oryza coarctata | 4 | Oco11G014300, Oco12G014460, Oco13G001590, Oco14G001680 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g44500.1, LOC_Os07g05880.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G036400, gene-BS78_10G213000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404216 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G031250, Chr05G008980, Chr10G019440, Chr11G003190 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G844700, Tel7E01G848100, Tel7E01G848400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG023880, gene_TRIDC2AG070320 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G499700.1.cds1, TraesCS2D02G499800.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb300170_P001, Zm00001eb389480_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35775 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30928, Zma_g4739 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1710, evm.TU.LG14.938, evm.TU.LG16.1370 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g14090, gene.Posoc03g16270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.805 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13518, nbisL1-mrna-24984 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10840, nbisL1-mrna-19151 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19192, nbisL1-mrna-9209 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000004l.87, add.evm.TU.utg000022l.44 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004130, Maker00016216 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16818, nbisL1-mrna-18233 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10323, nbisL1-mrna-7733 |
| Salicaceae | Populus euphratica | 2 | populus_peu04598, populus_peu12319 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616188 |
| Solanaceae | Solanum chilense | 1 | SOLCI003649300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009056 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1847 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06020.v3.1 |