Basic Information
Locus ID:
evm.TU.LG08.1022
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
transcription
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 13929792 | 13933203 | - | evm.TU.LG08.1022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 46,553.58 Da | 50.95 | 86.06 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF46689 | Homeodomain-like | 336 | 392 | 1.2E-10 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 337 | 393 | 5.0E-19 | - |
| TIGRFAM | TIGR01557 | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 338 | 388 | 2.5E-17 | IPR006447 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 409 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16560.1 | Homeodomain-like superfamily protein. Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis. | 0 |
| RefSeq | XP_039060639.1 | transcription repressor KAN1-like [Hibiscus syriacus] | 0 |
| Q93WJ9 | Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3C900 | Transcription repressor KAN1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00011079pilonHSYRG00105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 9 | evm.TU.LG08.1015, evm.TU.LG08.1017, evm.TU.LG08.1021 ... |