Basic Information
Locus ID:
evm.TU.LG07.933
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 24596176 | 24605133 | + | evm.TU.LG07.933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 124,248.71 Da | 39.94 | 82.17 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 950 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 533 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 490 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 414 | 950 | 4.4E-41 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 978 | 1114 | 6.43E-8 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 445 | 2.75E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 836 | 1105 | 4.6E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 546 | 2.0E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 547 | 835 | 2.6E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1002 | 1043 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.0091 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 9.6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 2.2E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.0E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 626 | 667 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 8.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 2.2 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.756207 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 499 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 959 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 952 | 10.601049 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1129 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_044464045.1 | topless-related protein 4-like [Mangifera indica] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067GY11 | Topless-related protein 4-like OS=Citrus sinensis OX=2711 GN=CISIN_1g001163mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology