Basic Information
Locus ID:
evm.TU.LG07.86
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 711341 | 715133 | - | evm.TU.LG07.86 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 106,683.08 Da | 48.83 | 63.99 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 425 | 733 | 2.88203E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 460 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 709 | 732 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 563 | 599 | 0.0069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 557 | 4.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 423 | 736 | 6.92E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 413 | 751 | 8.5E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 560 | 599 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 557 | 2.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 649 | 691 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 692 | 733 | 0.0052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 422 | 461 | 2.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 601 | 640 | 5.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 429 | 463 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 566 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 712 | 732 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 559 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 566 | 600 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 429 | 470 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 566 | 600 | 12.346452 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 448 | 462 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 544 | 558 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 448 | 462 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 586 | 600 | 3.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 407 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology