Basic Information
Locus ID:
evm.TU.LG07.726
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7255459 | 7264302 | - | evm.TU.LG07.726 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 63,401.51 Da | 48.18 | 79.40 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 56 | 211 | 2.8299E-30 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 90 | 165 | 7.3E-9 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 17 | 361 | 4.4E-112 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 422 | 497 | 8.7E-8 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 364 | 421 | 4.4E-11 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 210 | 2.62E-54 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 364 | 490 | 5.3E-38 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 212 | 361 | 4.45E-65 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 364 | 479 | 3.9E-28 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 49 | 205 | 9.3E-160 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 17 | 359 | 9.3E-160 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 5 | 546 | 2.7E-228 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 552 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021776422.1 | LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Chenopodium quinoa] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N4A6 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology