Basic Information
Locus ID:
evm.TU.LG07.652
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 20997367 | 21003060 | + | evm.TU.LG07.652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 50,636.38 Da | 42.61 | 91.32 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 78 | 275 | 2.41516E-132 | - |
| CDD | cd18787 | SF2_C_DEAD | 286 | 416 | 3.72889E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 299 | 407 | 7.2E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 98 | 259 | 1.0E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 142 | 427 | 4.71E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 282 | 446 | 5.8E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 63 | 281 | 1.6E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 92 | 289 | 3.6E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 326 | 407 | 4.6E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 73 | 101 | 10.401074 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 285 | 446 | 25.70108 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 104 | 274 | 28.912304 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 220 | 228 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_052488159.1 | eukaryotic initiation factor 4A-8 isoform X1 [Gossypium raimondii] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D2UBZ9 | Eukaryotic initiation factor 4A-11 OS=Gossypium raimondii OX=29730 GN=B456_010G098500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology