Basic Information
Locus ID:
evm.TU.LG07.625
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 20611899 | 20616785 | + | evm.TU.LG07.625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 51,634.14 Da | 28.75 | 118.54 | 0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 62 | 476 | 1.9E-39 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 7 | 476 | 2.49E-63 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 478 | 4.5E-81 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 25 | 471 | 40.429714 | IPR020846 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 260 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_052304964.1 | organic cation/carnitine transporter 7 [Populus trichocarpa] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1X169 | MFS domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G151600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology