Basic Information
Locus ID:
evm.TU.LG07.602
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
twin BRCT domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5958371 | 5975399 | + | evm.TU.LG07.602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 155,020.77 Da | 54.17 | 63.47 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 1174 | 1216 | 0.00794236 | IPR002999 |
| Pfam | PF12738 | twin BRCT domain | 9 | 70 | 3.0E-19 | IPR001357 |
| Pfam | PF13639 | Ring finger domain | 352 | 398 | 8.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 347 | 405 | 1.54E-14 | - |
| SUPERFAMILY | SSF52113 | BRCT domain | 5 | 88 | 8.14E-22 | IPR036420 |
| SUPERFAMILY | SSF48371 | ARM repeat | 510 | 854 | 4.25E-9 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 347 | 417 | 6.4E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 2 | 93 | 1.7E-24 | IPR036420 |
| Gene3D | G3DSA:2.30.30.140 | - | 1169 | 1220 | 1.7E-9 | - |
| SMART | SM00292 | BRCT_7 | 2 | 78 | 1.7E-16 | IPR001357 |
| SMART | SM00184 | ring_2 | 353 | 397 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 1 | 88 | 17.123121 | IPR001357 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 353 | 398 | 13.507235 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 369 | 378 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 870 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 1168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1228 | 1242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1355 | 1372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1228 | 1420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1286 | 1337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1271 | 1285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1243 | 1270 | - | - |
| Coils | Coil | Coil | 807 | 845 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_021739543.1 | eukaryotic translation initiation factor 5B-like [Chenopodium quinoa] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AZA6 | BRCT domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology