Basic Information
Locus ID:
evm.TU.LG07.600
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 20308965 | 20323518 | + | evm.TU.LG07.600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 75,444.98 Da | 35.48 | 96.38 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 436 | 532 | 2.66162E-27 | - |
| CDD | cd00030 | C2 | 257 | 359 | 2.00362E-25 | - |
| Pfam | PF00168 | C2 domain | 255 | 359 | 3.9E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 241 | 7.8E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 434 | 531 | 6.6E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 431 | 547 | 1.99E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 253 | 384 | 9.11E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 419 | 551 | 2.3E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 248 | 383 | 1.6E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 435 | 533 | 7.2E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 256 | 356 | 7.9E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 236 | 357 | 20.605532 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 417 | 534 | 21.81282 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 242 | 27.209414 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 451 | 463 | 4.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 490 | 4.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 499 | 507 | 4.1E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_031250532.1 | synaptotagmin-5 [Pistacia vera] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P5CER3 | Synaptotagmin-like mitochondrial-lipid-binding domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_288160 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology