Basic Information
Locus ID:
evm.TU.LG07.407
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 16437702 | 16442050 | + | evm.TU.LG07.407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 55,181.60 Da | 41.44 | 87.19 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 7.7E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 206 | 1.2E-14 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 52 | 81 | 1.3E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 377 | 4.59E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 1.14E-50 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 148 | 284 | 4.3E-26 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 147 | 3.5E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 6.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.17 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.013 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.41059 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.301834 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.83145 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.807884 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 205 | 11.532425 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.190411 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.391148 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.028328 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 11.94154 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.23535 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 7.8E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 7.8E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_031285077.1 | probable E3 ubiquitin-protein ligase XBOS32 [Pistacia vera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2H5P7Z3 | RING-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_111890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology