Basic Information
Locus ID:
evm.TU.LG07.40
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 374387 | 376658 | + | evm.TU.LG07.40 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 48,230.77 Da | 54.02 | 66.20 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 250 | 314 | 1.7567E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 28 | 113 | 1.23637E-46 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 29 | 113 | 1.1E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 250 | 317 | 2.7E-14 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 24 | 124 | 6.41E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 243 | 321 | 5.37E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 18 | 131 | 2.6E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 232 | 329 | 2.4E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 249 | 318 | 1.5E-17 | IPR009071 |
| SMART | SM01014 | ARID_2 | 23 | 113 | 9.7E-29 | - |
| SMART | SM00501 | bright_3 | 27 | 118 | 9.2E-26 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 250 | 317 | 15.433458 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 26 | 117 | 26.566542 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 260 | - | - |
| Coils | Coil | Coil | 299 | 319 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010673418.2 | high mobility group B protein 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CMU6 | High mobility group B protein 15-like OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g065800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology