Basic Information
Locus ID:
evm.TU.LG07.368
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
CONTAINS InterPro DOMAIN s WD40 repeat-like (InterPro IPR011046), WD40 repeat, region (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like (InterPro IPR015943)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3382000 | 3401787 | + | evm.TU.LG07.368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 210,495.39 Da | 44.00 | 83.18 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02187 | beta_tubulin | 1500 | 1924 | 0.0 | - |
| Pfam | PF03953 | Tubulin C-terminal domain | 1759 | 1880 | 1.1E-37 | IPR018316 |
| Pfam | PF00091 | Tubulin/FtsZ family, GTPase domain | 1501 | 1709 | 2.8E-68 | IPR003008 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 386 | 6.83E-25 | IPR036322 |
| SUPERFAMILY | SSF52490 | Tubulin nucleotide-binding domain-like | 1499 | 1741 | 2.75E-101 | IPR036525 |
| SUPERFAMILY | SSF55307 | Tubulin C-terminal domain-like | 1742 | 1927 | 1.77E-79 | IPR008280 |
| Gene3D | G3DSA:3.40.50.1440 | Tubulin/FtsZ, GTPase domain | 1499 | 1760 | 9.4E-130 | IPR036525 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 393 | 1.9E-22 | IPR015943 |
| Gene3D | G3DSA:1.10.287.600 | Helix hairpin bin | 1872 | 1928 | 1.4E-34 | IPR023123 |
| Gene3D | G3DSA:1.25.40.470 | - | 892 | 1137 | 8.2E-29 | - |
| Gene3D | G3DSA:3.30.1330.20 | - | 1761 | 1871 | 6.3E-40 | IPR037103 |
| SMART | SM00320 | WD40_4 | 251 | 293 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 39 | 16.0 | IPR001680 |
| SMART | SM00864 | Tubulin_4 | 1545 | 1742 | 4.8E-70 | IPR003008 |
| SMART | SM00320 | WD40_4 | 201 | 244 | 0.16 | IPR001680 |
| SMART | SM00865 | Tubulin_C_4 | 1744 | 1881 | 5.9E-42 | IPR018316 |
| ProSitePatterns | PS00227 | Tubulin subunits alpha, beta, and gamma signature. | 1638 | 1644 | - | IPR017975 |
| PRINTS | PR01163 | Beta-tubulin signature | 1586 | 1597 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1650 | 1662 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1539 | 1556 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1875 | 1886 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1910 | 1928 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1728 | 1737 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1827 | 1841 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1809 | 1827 | 1.2E-114 | IPR002453 |
| PRINTS | PR01161 | Tubulin signature | 1630 | 1648 | 1.1E-100 | IPR000217 |
| PRINTS | PR01163 | Beta-tubulin signature | 1606 | 1624 | 1.2E-114 | IPR002453 |
| PRINTS | PR01161 | Tubulin signature | 1674 | 1687 | 1.1E-100 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1508 | 1528 | 1.1E-100 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1649 | 1670 | 1.1E-100 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1591 | 1602 | 1.1E-100 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1688 | 1708 | 1.1E-100 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1604 | 1628 | 1.1E-100 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 1549 | 1568 | 1.1E-100 | IPR000217 |
| PRINTS | PR01163 | Beta-tubulin signature | 1743 | 1756 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1710 | 1722 | 1.2E-114 | IPR002453 |
| PRINTS | PR01161 | Tubulin signature | 1868 | 1896 | 1.1E-100 | IPR000217 |
| PRINTS | PR01163 | Beta-tubulin signature | 1845 | 1868 | 1.2E-114 | IPR002453 |
| PRINTS | PR01163 | Beta-tubulin signature | 1763 | 1779 | 1.2E-114 | IPR002453 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1925 | 1943 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1919 | 1943 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1203 | 1272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1174 | 1363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1418 | 1437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1421 | 1435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1332 | 1359 | - | - |
| Coils | Coil | Coil | 1906 | 1926 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24710.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021837869.1 | uncharacterized protein LOC110777576 [Spinacia oleracea] | 0 |
| Q41783 | Tubulin beta-6 chain OS=Zea mays OX=4577 GN=TUBB6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R5W0 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_102910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg26467, jg28311, jg28312, jg28313, jg28314 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18969 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022295 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g063920, BVRB_6g145710 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg45049, Sbi_jg58962, Sbi_jg63656 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23231 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012919 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02389, Sgl07538 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011716, gene:ENSEOMG00000012619 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0023760, CQ.Regalona.r1.3AG0024240 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30249470 |
| Apiaceae | Apium graveolens | 1 | Ag1G00629 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G002750, COCNU_14G001560, scaffold036828G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708316, gene-LOC103713325 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2814.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G10595 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003520m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22700.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g077500.2N, BniB07g040080.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0001, Ceq05G0007 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0004 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01510 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0036s00035.v1.0, Dusal.0036s00037.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g10920, gene.Thate03g18170 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1701, evm.TU.LG05.1328 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00036345, Pov_00038929 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G15173, Lb2G15174 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2562, BH02.2656, CH02.3873 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0026880, gene-QOZ80_1AG0026890 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0276480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054285 |
| Poaceae | Oryza coarctata | 3 | Oco01G016060, Oco02G016320, Oco02G017070 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g46510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G214900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604983 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G014010, Chr05G019780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G400700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG035380, gene_TRIDC3BG039750 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G236500.2, TraesCS3B02G263200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb158110_P001, Zm00001eb359400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25929, nbis-gene-25930 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10776 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG07.368, evm.TU.LG13.1354, evm.TU.LG13.821 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2362 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10476 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5098 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1393 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000196 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17441, nbisL1-mrna-1785 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22388 |
| Salicaceae | Populus euphratica | 2 | populus_peu11261, populus_peu11262 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598543 |
| Solanaceae | Solanum chilense | 1 | SOLCI002877500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003769 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10703 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0622 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13900.v3.1 |