Basic Information
Locus ID:
evm.TU.LG07.247
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 11935920 | 11944677 | - | evm.TU.LG07.247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 54,816.02 Da | 33.23 | 89.64 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 123 | 244 | 1.1E-11 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 267 | 351 | 7.5E-7 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 120 | 373 | 1.32E-91 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 107 | 377 | 3.6E-102 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_023872287.1 | probable CCR4-associated factor 1 homolog 7 [Quercus suber] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B6Z583 | poly(A)-specific ribonuclease OS=Davidia involucrata OX=16924 GN=Din_008858 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology