Basic Information
Locus ID:
evm.TU.LG07.1755
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40897384 | 40902643 | + | evm.TU.LG07.1755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 151,929.05 Da | 37.70 | 104.65 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1119 | 1339 | 1.05716E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 498 | 698 | 1.31127E-110 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 802 | 1096 | 3.12275E-94 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 185 | 472 | 2.74301E-101 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1138 | 1286 | 7.3E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 804 | 1045 | 6.3E-33 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 183 | 451 | 5.3E-20 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 516 | 650 | 1.2E-20 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1114 | 1347 | 1.03E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 174 | 483 | 1.44E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 496 | 720 | 5.02E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 800 | 1102 | 1.12E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 485 | 731 | 5.7E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 766 | 1102 | 3.5E-62 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 158 | 480 | 1.3E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1104 | 1357 | 5.4E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 525 | 698 | 1.6E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1147 | 1332 | 2.0E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 498 | 721 | 22.61582 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 184 | 464 | 28.484875 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 804 | 1084 | 38.765743 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1121 | 1355 | 18.874342 | IPR003439 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 29 | 5.0 | - |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 623 | 637 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 761 | - | - |
| Coils | Coil | Coil | 345 | 365 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology