Basic Information
Locus ID:
evm.TU.LG07.1754
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40883152 | 40888412 | + | evm.TU.LG07.1754 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 151,790.80 Da | 37.07 | 104.18 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 182 | 469 | 3.8851E-101 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 495 | 695 | 5.68596E-110 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 799 | 1093 | 3.44541E-96 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1116 | 1336 | 3.28397E-123 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 801 | 1042 | 1.9E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 513 | 647 | 1.2E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 181 | 448 | 2.5E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1135 | 1283 | 2.5E-31 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 799 | 1099 | 1.83E-55 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 171 | 480 | 2.22E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 493 | 717 | 3.07E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1111 | 1344 | 5.52E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 481 | 730 | 1.7E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1101 | 1354 | 1.4E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 763 | 1099 | 9.1E-64 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 155 | 477 | 1.2E-44 | IPR036640 |
| SMART | SM00382 | AAA_5 | 522 | 695 | 1.5E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1144 | 1329 | 2.0E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1118 | 1352 | 18.787642 | IPR003439 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 29 | 5.0 | - |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 801 | 1081 | 39.026237 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 495 | 718 | 22.755877 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 181 | 461 | 29.41466 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 620 | 634 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 758 | - | - |
| Coils | Coil | Coil | 342 | 362 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology