halophFGD

Basic Information

Locus ID: evm.TU.LG07.1579

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: Ubiquitin carboxyl-terminal hydrolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG07	30734591	30740648	+	evm.TU.LG07.1579

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	78,095.26 Da	49.05	74.57	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02661	Peptidase_C19E	173	478	4.04195E-161	-
Pfam	PF01753	MYND finger	67	104	6.1E-11	IPR002893
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	174	477	3.5E-43	IPR001394
SUPERFAMILY	SSF54001	Cysteine proteinases	170	491	9.42E-88	IPR038765
SUPERFAMILY	SSF144232	HIT/MYND zinc finger-like	65	108	4.36E-12	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	170	488	8.8E-91	-
Gene3D	G3DSA:6.10.140.2220	-	57	111	2.3E-14	-
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	174	480	49.344559	IPR028889
ProSiteProfiles	PS50865	Zinc finger MYND-type profile.	67	104	12.268109	IPR002893
ProSitePatterns	PS01360	Zinc finger MYND-type signature.	67	104	-	IPR002893
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	175	190	-	IPR018200

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity)

KEGG Pathway

KO Term:

K11855 (ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G24640.1	ubiquitin-specific protease 19.
RefSeq	XP_031276497.1	ubiquitin carboxyl-terminal hydrolase 18 [Pistacia vera]
Swiss-Prot	Q9SJA1	Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2
TrEMBL	A0A067FVW7	Ubiquitin carboxyl-terminal hydrolase 18-like OS=Citrus sinensis OX=2711 GN=CISIN_1g004724mg PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg10796, jg20051, jg34876, jg36847, jg39549, jg7792
Aizoaceae	Mesembryanthemum crystallinum	4	gene_16884, gene_23368, gene_25291, gene_7649
Amaranthaceae	Atriplex hortensis	4	Ah007223, Ah023706, Ah026751, Ah031699
Amaranthaceae	Beta vulgaris	2	BVRB_1g007770, BVRB_6g139030
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg19028, Sbi_jg19353, Sbi_jg37456, Sbi_jg4175 ... Sbi_jg43927, Sbi_jg49627, Sbi_jg59797, Sbi_jg62772
Amaranthaceae	Salicornia europaea	5	Seu_jg18008, Seu_jg24069, Seu_jg5298, Seu_jg5299, Seu_jg5622
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001028, GOSA_00013540, GOSA_00015287, GOSA_00022356
Amaranthaceae	Suaeda glauca	9	Sgl10579, Sgl15830, Sgl22375, Sgl27627, Sgl34239, Sgl39584 ... Sgl39629, Sgl65340, Sgl65426
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000000191, gene:ENSEOMG00000002393 ... gene:ENSEOMG00000003126, gene:ENSEOMG00000010335, gene:ENSEOMG00000012869, gene:ENSEOMG00000013532, gene:ENSEOMG00000015217, gene:ENSEOMG00000023633, gene:ENSEOMG00000027549, gene:ENSEOMG00000028670, gene:ENSEOMG00000036581, gene:ENSEOMG00000043643, gene:ENSEOMG00000047874
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0010600, CQ.Regalona.r1.1BG0015250 ... CQ.Regalona.r1.2AG0000470, CQ.Regalona.r1.4AG0015690, CQ.Regalona.r1.4AG0023990, CQ.Regalona.r1.4BG0016860, CQ.Regalona.r1.6AG0019110, CQ.Regalona.r1.6BG0020220
Anacardiaceae	Pistacia vera	3	pistato.v30041790, pistato.v30163770, pistato.v30251660
Apiaceae	Apium graveolens	5	Ag2G00052, Ag2G00496, Ag3G00070, Ag3G02449, Ag9G02723
Arecaceae	Cocos nucifera	8	COCNU_02G002700, COCNU_03G007490, COCNU_03G013510 ... COCNU_05G005120, COCNU_11G009220, COCNU_13G003830, contig69138511G000010, scaffold048079G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103701557, gene-LOC103703029, gene-LOC103707112 ... gene-LOC103710991, gene-LOC103716161, gene-LOC120107561
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2564.V1.1, AsparagusV1_03.1900.V1.1 ... AsparagusV1_05.3448.V1.1, AsparagusV1_07.2648.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G11882, Ftri14G11677, Ftri18G19627, Ftri7G04438 ... Ftri7G18094, Ftri8G18815
Brassicaceae	Arabidopsis thaliana	5	AT1G17110.2, AT2G24640.1, AT4G24560.1, AT4G31670.1 ... AT5G65450.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10000088m.g.v1.0, Thhalv10003706m.g.v1.0 ... Thhalv10006749m.g.v1.0, Thhalv10024307m.g.v1.0, Thhalv10024675m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g15230.v2.2, Sp2g28530.v2.2, Sp4g03620.v2.2 ... Sp5g33540.v2.2, Sp7g22560.v2.2, Sp7g29480.v2.2
Brassicaceae	Brassica nigra	8	BniB01g018910.2N, BniB02g022680.2N, BniB02g081260.2N ... BniB03g006940.2N, BniB05g006290.2N, BniB05g012640.2N, BniB06g013730.2N, BniB06g042510.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G0840, Ceq03G1215, Ceq03G1781, Ceq05G1735, Ceq05G1739 ... Ceq05G1746, Ceq05G1751, Ceq05G1757
Casuarinaceae	Casuarina glauca	10	Cgl01G0964, Cgl03G1319, Cgl03G1923, Cgl05G0062, Cgl05G1739 ... Cgl05G1740, Cgl05G1743, Cgl05G1745, Cgl05G1747, Cgl05G1749
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g07660, gene.Cymno11g00040, gene.Cymno11g07290
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g10860, gene.Thate04g13150, gene.Thate05g14930 ... gene.Thate05g26910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10643, nbisL1-mrna-4050, nbisL1-mrna-5222
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2711, evm.TU.LG06.1587, evm.TU.LG07.1579
Plantaginaceae	Plantago ovata	3	Pov_00021045, Pov_00030579, Pov_00037205
Plumbaginaceae	Limonium bicolor	5	Lb3G17603, Lb3G17604, Lb5G27661, Lb7G34669, Lb7G34737
Poaceae	Echinochloa crus-galli	12	AH03.2218, AH06.2505, AH07.1004, AH08.1839, BH03.2180 ... BH06.2307, BH07.1116, BH08.1919, CH03.2553, CH06.2531, CH07.893, CH08.2103
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0107590, gene-QOZ80_2BG0161210 ... gene-QOZ80_6AG0538070, gene-QOZ80_6AG0546910, gene-QOZ80_6BG0500380, gene-QOZ80_8AG0634560, gene-QOZ80_8BG0663500
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.5HG0487600.1, HORVU.MOREX.r3.6HG0583100.1 ... HORVU.MOREX.r3.7HG0693570.1, HORVU.MOREX.r3.7HG0740830.1
Poaceae	Lolium multiflorum	5	gene-QYE76_005775, gene-QYE76_022002, gene-QYE76_022268 ... gene-QYE76_031108, gene-QYE76_036515
Poaceae	Oryza coarctata	8	Oco03G006600, Oco04G006910, Oco11G014230, Oco12G014410 ... Oco15G012590, Oco16G010000, Oco17G006920, Oco18G007080
Poaceae	Oryza sativa	4	LOC_Os02g14730.1, LOC_Os06g44380.1, LOC_Os08g37350.1 ... LOC_Os09g28940.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G208900, gene-BS78_04G101500 ... gene-BS78_07G167300, gene-BS78_10G212400
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0206428, Pt_Chr0401452, Pt_Chr0403278, Pt_Chr0404233 ... Pt_Chr0701806, Pt_Chr0701839
Poaceae	Sporobolus alterniflorus	14	Chr02G031210, Chr05G008930, Chr06G032000, Chr0G000410 ... Chr0G013550, Chr0G028140, Chr0G028920, Chr10G019360, Chr11G003270, Chr15G023440, Chr16G015900, Chr17G015310, Chr20G003940, Chr29G003780
Poaceae	Thinopyrum elongatum	5	Tel5E01G395200, Tel5E01G664800, Tel6E01G407100 ... Tel7E01G489600, Tel7E01G853500
Poaceae	Triticum dicoccoides	8	gene_TRIDC5AG038540, gene_TRIDC5BG040600 ... gene_TRIDC6AG028430, gene_TRIDC6BG035780, gene_TRIDC7AG037560, gene_TRIDC7AG069740, gene_TRIDC7BG028320, gene_TRIDC7BG064180
Poaceae	Triticum aestivum	12	TraesCS5A02G246000.3, TraesCS5B02G243400.1 ... TraesCS5D02G252600.2, TraesCS6A02G192600.1, TraesCS6B02G231700.4, TraesCS6D02G179700.1, TraesCS7A02G282200.4, TraesCS7A02G498400.1, TraesCS7B02G179000.2, TraesCS7B02G405400.1, TraesCS7D02G280800.4, TraesCS7D02G485600.1
Poaceae	Zea mays	7	Zm00001eb038400_P001, Zm00001eb180290_P001 ... Zm00001eb204570_P002, Zm00001eb238660_P002, Zm00001eb241820_P001, Zm00001eb274940_P001, Zm00001eb315400_P002
Poaceae	Zoysia japonica	6	nbis-gene-17232, nbis-gene-19624, nbis-gene-34211 ... nbis-gene-47691, nbis-gene-53133, nbis-gene-9865
Poaceae	Zoysia macrostachya	6	Zma_g12507, Zma_g15405, Zma_g23143, Zma_g24240, Zma_g30923 ... Zma_g32697
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.2220, evm.TU.LG03.1457, evm.TU.LG04.1888 ... evm.TU.LG06.463, evm.TU.LG12.124, evm.TU.LG14.1397, evm.TU.LG18.333, evm.TU.LG26.707
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g13980, gene.Posoc04g00230, gene.Posoc04g17210
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.958, evm.TU.Scaffold_6_RagTag.1706 ... evm.TU.Scaffold_7_RagTag.927, evm.TU.Scaffold_8_RagTag.813, evm.TU.Scaffold_9_RagTag.84
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-13532, nbisL1-mrna-17463, nbisL1-mrna-19391 ... nbisL1-mrna-22103, nbisL1-mrna-9426
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-18068, nbisL1-mrna-20773, nbisL1-mrna-20875 ... nbisL1-mrna-4917
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12063, nbisL1-mrna-20537, nbisL1-mrna-6756 ... nbisL1-mrna-7604, nbisL1-mrna-9193
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.709, evm.TU.utg000003l.63 ... evm.TU.utg000004l.236, evm.TU.utg000011l.1035, evm.TU.utg000018l.478
Rhizophoraceae	Kandelia obovata	5	Maker00003662, Maker00004226, Maker00007765, Maker00010553 ... Maker00017616
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-11506, nbisL1-mrna-13053, nbisL1-mrna-15390 ... nbisL1-mrna-3704, nbisL1-mrna-6687
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10172, nbisL1-mrna-17036, nbisL1-mrna-21623 ... nbisL1-mrna-7750
Salicaceae	Populus euphratica	9	populus_peu00710, populus_peu00711, populus_peu04620 ... populus_peu13041, populus_peu13042, populus_peu14554, populus_peu17795, populus_peu17801, populus_peu32188
Solanaceae	Lycium barbarum	4	gene-LOC132604281, gene-LOC132618781, gene-LOC132627618 ... gene-LOC132635607
Solanaceae	Solanum chilense	3	SOLCI000351300, SOLCI002313400, SOLCI003043700
Solanaceae	Solanum pennellii	4	gene-LOC107007383, gene-LOC107017022, gene-LOC107025893 ... gene-LOC107028768
Tamaricaceae	Reaumuria soongarica	4	STRG.5897_chr02_+, STRG.9810_chr06_-, gene_16397, gene_6405
Tamaricaceae	Tamarix chinensis	3	TC01G0957, TC03G3010, TC09G2512
Zosteraceae	Zostera marina	5	Zosma01g07240.v3.1, Zosma03g34580.v3.1, Zosma05g27010.v3.1 ... Zosma06g25230.v3.1, Zosma06g25240.v3.1