Basic Information
Locus ID:
evm.TU.LG07.1550
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 34439598 | 34455599 | - | evm.TU.LG07.1550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 116,550.55 Da | 43.67 | 77.41 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 427 | 467 | 6.31323E-17 | - |
| Pfam | PF00628 | PHD-finger | 428 | 468 | 6.1E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 176 | 231 | 6.6E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 361 | 409 | 3.4E-15 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 668 | 759 | 2.04E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 410 | 469 | 6.79E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 516 | 570 | 9.87E-8 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 626 | 781 | 5.1E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 413 | 503 | 2.7E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 516 | 575 | 1.4E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 427 | 468 | 4.1E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 516 | 572 | 0.099 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 621 | 783 | 9.593198 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 425 | 470 | 10.024 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 428 | 467 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 952 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 945 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 325 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021729860.1 | uncharacterized protein LOC110696835 [Chenopodium quinoa] | 0 |
| Q9Z0E3 | Autoimmune regulator OS=Mus musculus OX=10090 GN=Aire PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6E4 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology