Basic Information
Locus ID:
evm.TU.LG07.1534
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 34007533 | 34018516 | - | evm.TU.LG07.1534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 93,182.25 Da | 56.42 | 67.86 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 773 | 811 | 1.01419E-15 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 771 | 816 | 1.8E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 766 | 818 | 5.59E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 758 | 824 | 7.3E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 773 | 812 | 10.364846 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 111 | - | - |
| Coils | Coil | Coil | 703 | 730 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021732900.1 | uncharacterized protein LOC110699684 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C9F993 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology