Basic Information
Locus ID:
evm.TU.LG07.1492
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 32710926 | 32722366 | - | evm.TU.LG07.1492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 71,186.46 Da | 51.43 | 60.95 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 133 | 183 | 1.07193E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 202 | 260 | 1.5E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 281 | 325 | 8.1E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 327 | 1.41E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 267 | 2.56E-8 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 543 | 568 | 2.59E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 214 | 2.34E-19 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 540 | 592 | 1.9E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 214 | 6.4E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 256 | 511 | 2.1E-82 | - |
| SMART | SM00647 | ibrneu5 | 202 | 260 | 9.6E-11 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 264 | 334 | 0.041 | IPR002867 |
| SMART | SM00547 | zf_4 | 543 | 567 | 2.2E-4 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 129 | 338 | 46.360764 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 545 | 564 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 535 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology