Basic Information
Locus ID:
evm.TU.LG07.1482
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Topless-related protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 29717835 | 29723912 | - | evm.TU.LG07.1482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 116,072.62 Da | 40.41 | 83.54 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 950 | 976 | 0.043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 461 | 2.6E-4 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 759 | 1031 | 9.94E-17 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 350 | 891 | 1.41E-45 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 308 | 483 | 6.0E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 658 | 911 | 1.6E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 912 | 1040 | 1.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 508 | 657 | 1.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 936 | 977 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 770 | 801 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 505 | 0.056 | IPR001680 |
| SMART | SM00320 | WD40_4 | 847 | 886 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 594 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 804 | 844 | 1.0 | IPR001680 |
| SMART | SM00668 | ctlh | 36 | 94 | 3.7E-11 | IPR006595 |
| SMART | SM00320 | WD40_4 | 420 | 461 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 638 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 551 | 94.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 427 | 470 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 854 | 886 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 854 | 886 | 9.203785 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 37 | 94 | 12.442501 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 6 | 38 | 9.077131 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 427 | 465 | 9.651964 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 448 | 462 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_031279576.1 | topless-related protein 1-like [Pistacia vera] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A314YCM8 | Protein TPR3-like isoform X1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_15690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for evm.TU.LG07.1482.