Basic Information
Locus ID:
evm.TU.LG07.1472
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 29657580 | 29661378 | + | evm.TU.LG07.1472 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 64,091.98 Da | 31.54 | 99.98 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 368 | 3.17567E-26 | - |
| CDD | cd00030 | C2 | 447 | 543 | 1.79673E-23 | - |
| Pfam | PF00168 | C2 domain | 446 | 546 | 1.6E-21 | IPR000008 |
| Pfam | PF00168 | C2 domain | 264 | 368 | 1.3E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 250 | 1.9E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 393 | 1.06E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 443 | 563 | 1.13E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 260 | 397 | 7.5E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 429 | 563 | 1.7E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 446 | 544 | 7.7E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 265 | 365 | 3.9E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 245 | 366 | 20.577126 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 251 | 29.045773 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 425 | 545 | 19.234903 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 462 | 474 | 2.5E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 510 | 518 | 2.5E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 488 | 501 | 2.5E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021691209.1 | synaptotagmin-4-like isoform X1 [Hevea brasiliensis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7DAE8 | Synaptotagmin-4 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G01397 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology