Basic Information
Locus ID:
evm.TU.LG07.1471
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 29652749 | 29656765 | + | evm.TU.LG07.1471 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 63,063.30 Da | 31.44 | 99.31 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 259 | 361 | 3.2409E-26 | - |
| CDD | cd00030 | C2 | 439 | 535 | 1.51907E-26 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 243 | 3.0E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 437 | 538 | 1.1E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 257 | 361 | 1.7E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 386 | 6.1E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 433 | 556 | 2.23E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 418 | 555 | 2.1E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 250 | 384 | 2.2E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 258 | 358 | 1.1E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 438 | 536 | 4.6E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 238 | 359 | 20.903803 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 244 | 28.407879 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 417 | 537 | 20.520311 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 502 | 510 | 5.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 454 | 466 | 5.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 480 | 493 | 5.1E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_024034066.1 | synaptotagmin-4 isoform X3 [Citrus clementina] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067F6Q0 | Synaptotagmin-5-like OS=Citrus sinensis OX=2711 GN=CISIN_1g008305mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology