Basic Information
Locus ID:
evm.TU.LG07.1370
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 28829875 | 28832492 | - | evm.TU.LG07.1370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 35,139.80 Da | 46.57 | 61.24 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 197 | 240 | 5.9E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 246 | 303 | 1.5E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 62 | 143 | 3.3E-19 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 247 | 4.12E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 134 | 191 | 1.31E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 59 | 133 | 2.88E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 261 | 2.0E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 269 | 307 | 1.3E-18 | - |
| SMART | SM00184 | ring_2 | 198 | 240 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 55 | 131 | 25.510483 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 198 | 241 | 12.046688 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 133 | 197 | 33.501331 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_031274657.1 | probable E3 ubiquitin-protein ligase RZFP34 [Pistacia vera] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | V4WBS0 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10008946mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology