Basic Information
Locus ID:
evm.TU.LG07.1347
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 28578022 | 28583532 | + | evm.TU.LG07.1347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 44,843.85 Da | 44.06 | 67.85 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 252 | 326 | 1.03254E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 132 | 206 | 1.82492E-53 | - |
| CDD | cd12352 | RRM1_TIA1_like | 48 | 118 | 1.89324E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 320 | 4.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | 8.8E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 114 | 2.0E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 243 | 331 | 1.76E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 45 | 211 | 8.15E-45 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 223 | 1.4E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 127 | 6.8E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 229 | 331 | 2.5E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 253 | 322 | 6.3E-18 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 132 | 205 | 6.7E-5 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 47 | 116 | 3.7E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 132 | 205 | 6.9E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 326 | 15.32331 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | 15.255088 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | 17.352901 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 235 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_008242269.1 | PREDICTED: oligouridylate-binding protein 1-like [Prunus mume] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5Y4W4 | Oligouridylate-binding protein 1-like OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology