Basic Information
Locus ID:
evm.TU.LG07.1262
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 27866002 | 27876337 | - | evm.TU.LG07.1262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 97,311.17 Da | 44.48 | 84.89 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 714 | 844 | 2.34949E-59 | - |
| CDD | cd17939 | DEADc_EIF4A | 506 | 703 | 5.8006E-134 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 727 | 835 | 2.3E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 526 | 687 | 3.1E-38 | IPR011545 |
| Pfam | PF00400 | WD domain, G-beta repeat | 199 | 235 | 2.6E-4 | IPR001680 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 570 | 855 | 1.49E-72 | IPR027417 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 362 | 2.01E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 17 | 156 | 3.6E-8 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 491 | 709 | 4.0E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 710 | 874 | 7.6E-58 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 164 | 397 | 1.7E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 238 | 284 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 20 | 63 | 220.0 | IPR001680 |
| SMART | SM00487 | ultradead3 | 520 | 717 | 2.9E-54 | IPR014001 |
| SMART | SM00490 | helicmild6 | 754 | 835 | 1.5E-31 | IPR001650 |
| SMART | SM00320 | WD40_4 | 143 | 193 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 363 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 235 | 5.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 85 | 126 | 0.13 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 203 | 244 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 501 | 529 | 10.560987 | IPR014014 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 203 | 240 | 10.469233 | - |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 532 | 702 | 28.799129 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 713 | 874 | 26.35836 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 648 | 656 | - | IPR000629 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 222 | 236 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 411 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_031255681.1 | DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Pistacia vera] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9ESY1 | eukaryotic initiation factor 4A-15-like OS=Juglans regia OX=51240 GN=LOC109009115 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology