Basic Information
Locus ID:
evm.TU.LG07.1212
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 27445596 | 27447023 | - | evm.TU.LG07.1212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 54,307.29 Da | 40.49 | 77.60 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 194 | 241 | 3.4E-8 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 378 | 465 | 2.5E-31 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 269 | 292 | 0.014 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 97 | 259 | 3.3E-28 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 168 | 195 | 0.0016 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 197 | 229 | 6.3E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 194 | 228 | 11.684803 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 163 | 193 | 8.6266 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 97 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_031252375.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Pistacia vera] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | V4UF54 | DYW_deaminase domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10008172mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology